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1.
Plant Mol Biol ; 114(1): 3, 2024 Jan 13.
Artigo em Inglês | MEDLINE | ID: mdl-38217735

RESUMO

Base excision repair (BER) generates gapped DNA intermediates containing a 5'-terminal 2-deoxyribose-5-phosphate (5'-dRP) group. In mammalian cells, gap filling and dRP removal are catalyzed by Pol ß, which belongs to the X family of DNA polymerases. In higher plants, the only member of the X family of DNA polymerases is Pol λ. Although it is generally believed that plant Pol λ participates in BER, there is limited experimental evidence for this hypothesis. Here we have characterized the biochemical properties of Arabidopsis thaliana Pol λ (AtPol λ) in a BER context, using a variety of DNA repair intermediates. We have found that AtPol λ performs gap filling inserting the correct nucleotide, and that the rate of nucleotide incorporation is higher in substrates containing a C in the template strand. Gap filling catalyzed by AtPol λ is most efficient with a phosphate at the 5'-end of the gap and is not inhibited by the presence of a 5'-dRP mimic. We also show that AtPol λ possesses an intrinsic dRP lyase activity that is reduced by mutations at two lysine residues in its 8-kDa domain, one of which is present in Pol λ exclusively and not in any Pol ß homolog. Importantly, we also found that the dRP lyase activity of AtPol λ allows efficient completion of uracil repair in a reconstituted short-patch BER reaction. These results suggest that AtPol λ plays an important role in plant BER.


Assuntos
Arabidopsis , DNA Polimerase beta , Animais , Arabidopsis/genética , Arabidopsis/metabolismo , 60562 , DNA Polimerase Dirigida por DNA/genética , DNA Polimerase Dirigida por DNA/química , DNA Polimerase Dirigida por DNA/metabolismo , Reparo do DNA , Nucleotídeos , Fosfatos , Mamíferos/metabolismo
2.
DNA Repair (Amst) ; 115: 103341, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35598473

RESUMO

Active DNA demethylation plays an important role in controlling methylation patterns in eukaryotes. In plants, the DEMETER-LIKE (DML) family of 5-methylcytosine DNA glycosylases initiates DNA demethylation through a base excision repair pathway. However, it is poorly understood how these DNA demethylases are recruited to their target loci and the role that histone marks play in this process. Arabidopsis REPRESSOR OF SILENCING 1 (ROS1) is a representative enzyme of the DML family, whose members are uniquely characterized by a basic amino-terminal domain mediating nonspecific binding to DNA, a discontinuous catalytic domain, and a conserved carboxy-terminal domain of unknown function. Here, we show that ROS1 interacts with the N-terminal tail of H3 through its C-terminal domain. Importantly, phosphorylation at H3 Ser28, but not Ser10, abrogates ROS1 interaction with H3. Conserved residues at the C-terminal domain are not only required for H3 interaction, but also for efficient DNA binding and catalytic activity. Our findings suggest that the C-terminal domain of ROS1 may function as a histone reader module involved in recruitment of the DNA demethylase activity to specific genomic regions.


Assuntos
Proteínas de Arabidopsis , Arabidopsis , 5-Metilcitosina/metabolismo , Proteínas de Arabidopsis/metabolismo , DNA/metabolismo , Metilação de DNA , Histonas/metabolismo , Proteínas Nucleares/metabolismo , Proteínas Tirosina Quinases/genética , Proteínas Tirosina Quinases/metabolismo , Proteínas Proto-Oncogênicas/metabolismo
4.
Mol Genet Genomics ; 265(5): 922-9, 2001 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-11523810

RESUMO

The steroidal glycoalkaloid alpha-tomatine which is present in tomato (Lycopersicum sculentum) is assumed to protect the plant against phytopathogenic fungi. We have isolated a gene from the fungal pathogen Fusarium oxysporum f. sp. lycopersici that is induced by this glycoalkaloid. This gene, designated panC, encodes a predicted protein with a molecular mass of 41 kDa that shows a high degree of sequence similarity to pantothenate synthetases from yeast, plants and bacteria. Recombinant PanC protein from F. oxysporum has been over-expressed in Escherichia coli and purified to homogeneity. It shows pantothenate synthetase activity in the presence of D-pantoate, beta-alanine and ATP. The panC gene from F. oxysporum functionally complements an E. coli panC mutant, demonstrating that the PanC protein functions in vivo as a pantothenate synthetase. Southern analysis of F. oxysporum genomic DNA from other formae speciales indicates that there is a single copy of the pantothenate syntethase gene in this fungus. The presence of a STRE consensus sequence (CCCCT) in the promoter region of the gene suggests that the induction of panC may be part of a cellular stress response triggered by alpha-tomatine.


Assuntos
Fusarium/genética , Regulação Fúngica da Expressão Gênica , Peptídeo Sintases/genética , Sequência de Aminoácidos , Antifúngicos/farmacologia , Sequência de Bases , Clonagem Molecular , Regulação Fúngica da Expressão Gênica/efeitos dos fármacos , Dados de Sequência Molecular , Alinhamento de Sequência , Tomatina/farmacologia
5.
Plant Mol Biol ; 47(6): 795-804, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11785940

RESUMO

Repair of the ubiquitous mutagenic lesion 7,8-dihydro-8-oxoguanine (8-oxoG) is initiated in eukaryotes by DNA glycosylases/lyases, such as yeast Ogg1, that do not share significant sequence identity with their prokaryotic counterparts, typified by Escherichia coli MutM (Fpg) protein. The unexpected presence of a functional mutM orthologue in the model plant Arabidopsis thaliana has brought into question the existence of functional OGG1 orthologues in plants. We report here the cDNA cloning, expression and functional characterization of AtOGG1, an Arabidopsis thaliana gene widely expressed in different plant tissues which encodes a 40.3 kDa protein with significant sequence identity to yeast and human Ogg1 proteins. Purified AtOgg1 enzyme specifically cleaves duplex DNA containing an 8-OxoG:C mispair, and the repair reaction proceeds through an imine intermediate


Assuntos
Arabidopsis/genética , Proteínas de Escherichia coli , Guanina/análogos & derivados , N-Glicosil Hidrolases/genética , Sequência de Aminoácidos , Arabidopsis/enzimologia , Proteínas de Bactérias/genética , DNA Glicosilases , DNA Complementar/química , DNA Complementar/genética , DNA-Formamidopirimidina Glicosilase , Eletroforese em Gel de Poliacrilamida , Escherichia coli/genética , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Teste de Complementação Genética , Guanina/metabolismo , Dados de Sequência Molecular , Mutação , N-Glicosil Hidrolases/metabolismo , Fenótipo , RNA de Plantas/genética , RNA de Plantas/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Distribuição Tecidual
6.
Plant Mol Biol ; 44(1): 43-52, 2000 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11094978

RESUMO

Reactive oxygen species (ROS) are ubiquitous DNA-damaging agents, and the repair of oxidative DNA lesions is essential to prevent mutations and cell death. Escherichia coli endonuclease III is the prototype repair enzyme for removal of oxidized pyrimidines from DNA. A database homology search identified a genomic sequence in Arabidopsis thaliana encoding a predicted protein with sequence similarity to E. coli endonuclease III. We cloned, sequenced and expressed the corresponding cDNA, which encodes a 39.1 kDa protein containing several sequence motifs conserved in endonuclease III homologues, including an iron-sulfur cluster domain and critical residues at the active site. The protein, designated AtNTH1, was over-expressed in E. coli and purified to apparent homogeneity. AtNTH1 exhibits DNA-glycosylase activity on different types of DNA substrates with pyrimidine damage, being able to release both urea and thymine glycol from double-stranded polydeoxyribonucleotides. The enzyme also possesses an apurinic/apyrimidinic lyase activity on UV- and gamma-irradiated DNA substrates. The AtNTH1 gene contains 10 introns and 11 exons and is widely expressed in different plant tissues. Our results suggest that AtNTH1 is a structural and functional homologue of endonuclease III and probably plays a major role in plant defence against oxidative DNA damage.


Assuntos
Arabidopsis/genética , DNA Complementar/genética , Desoxirribonuclease (Dímero de Pirimidina) , Endodesoxirribonucleases/genética , Proteínas de Escherichia coli , Sequência de Aminoácidos , Arabidopsis/enzimologia , Northern Blotting , Carbono-Oxigênio Liases/metabolismo , Clonagem Molecular , DNA Glicosilases , Reparo do DNA , DNA Complementar/química , DNA Liase (Sítios Apurínicos ou Apirimidínicos) , Desoxirribonuclease IV (Fago T4-Induzido) , Endodesoxirribonucleases/metabolismo , Escherichia coli/enzimologia , Escherichia coli/genética , Regulação da Expressão Gênica de Plantas , Dados de Sequência Molecular , N-Glicosil Hidrolases/metabolismo , Oxirredução , RNA de Plantas/genética , RNA de Plantas/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Distribuição Tecidual
7.
Mol Plant Microbe Interact ; 12(10): 852-61, 1999 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-10517025

RESUMO

Plants produce a variety of secondary metabolites, many of which have antifungal activity. Saponins are plant glycosides that may provide a preformed chemical barrier against phytopathogenic fungi. Fusarium oxysporum f. sp. lycopersici and other tomato pathogens produce extracellular enzymes known as tomatinases, which deglycosylate alpha-tomatine to yield less toxic derivatives. We have cloned and characterized the cDNA and genomic DNA encoding tomatinase from the vascular pathogen of tomato F. oxysporum f. sp. lycopersici. This gene encodes a protein (FoTom1) with no amino acid sequence homology to any previously described saponinase, including tomatinase from Septoria lycopersici. Although FoTom1 is related to family 10 glycosyl hydrolases, which include mainly xylanases, it has no detectable xylanase activity. We have overexpressed and purified the protein with a bacterial heterologous system. The purified enzyme is active and cleaves alpha-tomatine into the less toxic compounds tomatidine and lycotetraose. Tomatinase from F. oxysporum f. sp. lycopersici is encoded by a single gene whose expression is induced by alpha-tomatine. This expression is fully repressed in the presence of glucose, which is consistent with the presence of two putative CREA binding sites in the promoter region of the tomatinase gene. The tomatinase gene is expressed in planta in both roots and stems throughout the entire disease cycle of F. oxysporum f. sp. lycopersici.


Assuntos
Fusarium/enzimologia , Fusarium/genética , Glicosídeo Hidrolases/genética , Glicosídeo Hidrolases/metabolismo , Solanum lycopersicum/microbiologia , Sequência de Aminoácidos , Sequência de Bases , Sequência de Carboidratos , Biblioteca Gênica , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/isolamento & purificação , Dados de Sequência Molecular , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Tomatina/análogos & derivados , Tomatina/química , Tomatina/metabolismo
8.
Biochemistry ; 38(1): 243-6, 1999 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-9890904

RESUMO

A functional human homologue of Escherichia coli endonuclease III (Nth-Eco protein) has recently been cloned and characterized [Aspinwall, R., Rothwell, D. G., Roldan-Arjona, T., Anselmino, C., Ward, C. J., Cheadle, J. P., Sampson, J. R., Lindahl, T., Harris, P. C., and Hickson, I. D. (1997) Proc. Natl. Acad. Sci. U.S.A., 94, 109-114]. This enzyme, designated hNTH1 protein, shares an extensive sequence similarity with Nth-Eco protein and a related enzyme from Schizosaccharomyces pombe (Nth-Spo protein). We investigated the substrate specificity of this human enzyme for oxidative DNA base damage, using the technique of gas chromatography/isotope-dilution mass spectrometry. Four different DNA substrates damaged by various free radical-generating systems were used. 5-Hydroxycytosine, thymine glycol, 5-hydroxy-6-hydrothymine, 5,6-dihydroxycytosine, and 5-hydroxyuracil were substrates of hNTH1 protein among 17 lesions found in DNA substrates. The substrate specificity and excision kinetics of the human enzyme were found to be significantly different from those of Nth-Spo and Nth-Eco proteins.


Assuntos
Dano ao DNA , Reparo do DNA , DNA/química , Desoxirribonuclease (Dímero de Pirimidina) , Endodesoxirribonucleases/química , Proteínas de Escherichia coli , Barbitúricos/metabolismo , Citosina/análogos & derivados , Citosina/metabolismo , DNA/efeitos dos fármacos , DNA/metabolismo , Dano ao DNA/efeitos dos fármacos , Endodesoxirribonucleases/metabolismo , Endodesoxirribonucleases/farmacologia , Escherichia coli/enzimologia , Humanos , Cinética , Oxirredução , Especificidade por Substrato , Timina/análogos & derivados , Timina/metabolismo , Uracila/análogos & derivados , Uracila/metabolismo
9.
Nucleic Acids Res ; 26(21): 4935-42, 1998 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-9776756

RESUMO

Exposure of an aqueous, aerated solution (pH 7) of a double-stranded DNA to 193 nm light, of sufficient energy to ionise DNA, leads to selective, non-random modification at guanine in the form of frank single-strand break (ssb) and base modifications, revealed by treatment with either Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg), Escherichia coli endonuclease III (Nth) or hot piperidine treatment. There is a similar neighbouring base sequence dependence for Fpg- and Nth-sensitive damage as that previously reported for both hot alkali-labile damage and prompt ssb. Low yields of photoproducts, namely pyrimidine dimers, are also revealed using the enzyme T4 endonuclease V (T4 endo V). Although irradiation of DNA with 193 nm light causes photoionisation of all the nucleic acid bases, these results indicate that guanine is the predominant site for localisation of the oxidative damage. These findings are consistent with migration of the radical cation to 'target' damage at guanine sites.


Assuntos
Dano ao DNA , DNA/química , DNA/efeitos da radiação , Desoxirribonuclease (Dímero de Pirimidina) , Proteínas de Escherichia coli , Guanina/química , Guanina/efeitos da radiação , Sequência de Bases , DNA/genética , DNA-Formamidopirimidina Glicosilase , Endodesoxirribonucleases , Escherichia coli/enzimologia , Íons , Luz , Dados de Sequência Molecular , N-Glicosil Hidrolases , Oxirredução , Fotoquímica , Plasmídeos/química , Plasmídeos/genética , Plasmídeos/efeitos da radiação , Dímeros de Pirimidina/química , Dímeros de Pirimidina/efeitos da radiação
10.
Biochemistry ; 37(2): 590-5, 1998 Jan 13.
Artigo em Inglês | MEDLINE | ID: mdl-9425081

RESUMO

A gene from Schizosaccharomyces pombe, which encodes a protein with a strong sequence similarity to the Nth protein of Escherichia coli, has recently been identified [Roldán-Arjona, T., Anselmino, C., and Lindahl, T. (1996) Nucleic Acids Res. 24, 3307-3312]. The functional analysis of this eukaryotic enzyme indicated that it is a homologue of E. coli Nth protein. The gene has been subcloned and the protein (Nth-Spo) purified to apparent homogeneity. We investigated the substrate specificity of this eukaryotic enzyme for modified bases in oxidatively damaged DNA, using the technique of gas chromatography/isotope-dilution mass spectrometry (GC/IDMS). DNA substrates containing up to 17 types of modified bases were prepared by gamma-irradiation or by treatment with H2O2 in the presence of Fe(III)-EDTA or Cu(II). The results revealed an efficient excision of five pyrimidine-derived lesions, 5-hydroxycytosine, thymine glycol, 5-hydroxy-6-hydrothymine, 5,6-dihydroxycytosine, and 5-hydroxyuracil. None of the other pyrimidine or purine lesions was excised. Excision was measured as a function of enzyme concentration, time, substrate concentration, and temperature. Kinetic constants were determined. Although some DNA base lesions removed by Nth-Spo protein were similar to those previously described for E. coli Nth protein, differences between substrate specificities of these two enzymes were noted.


Assuntos
Dano ao DNA , Desoxirribonuclease (Dímero de Pirimidina) , Endodesoxirribonucleases/metabolismo , Proteínas de Escherichia coli , Schizosaccharomyces/enzimologia , Cromatografia Gasosa-Espectrometria de Massas , Oxirredução , Pirimidinas/metabolismo , Especificidade por Substrato
11.
Proc Natl Acad Sci U S A ; 94(15): 8016-20, 1997 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-9223306

RESUMO

The major mutagenic base lesion in DNA caused by exposure to reactive oxygen species is 8-hydroxyguanine (8-oxo-7, 8-dihydroguanine). In bacteria and Saccharomyces cerevisiae, this damaged base is excised by a DNA glycosylase with an associated lyase activity for chain cleavage. We have cloned, sequenced, and expressed a human cDNA with partial sequence homology to the relevant yeast gene. The encoded 47-kDa human enzyme releases free 8-hydroxyguanine from oxidized DNA and introduces a chain break in a double-stranded oligonucleotide specifically at an 8-hydroxyguanine residue base paired with cytosine. Expression of the human protein in a DNA repair-deficient E. coli mutM mutY strain partly suppresses its spontaneous mutator phenotype. The gene encoding the human enzyme maps to chromosome 3p25. These results show that human cells have an enzyme that can initiate base excision repair at mutagenic DNA lesions caused by active oxygen.


Assuntos
DNA Glicosilases , Proteínas de Escherichia coli , N-Glicosil Hidrolases/genética , Sequência de Aminoácidos , Mapeamento Cromossômico , Cromossomos Humanos Par 3 , Clonagem Molecular , DNA Complementar , DNA-Formamidopirimidina Glicosilase , Escherichia coli/genética , Humanos , Dados de Sequência Molecular , N-Glicosil Hidrolases/isolamento & purificação , N-Glicosil Hidrolases/metabolismo , Fenótipo , Homologia de Sequência de Aminoácidos , Especificidade por Substrato
12.
Photochem Photobiol ; 65(4): 660-5, 1997 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9114741

RESUMO

Irradiation of aqueous solutions of plasmid DNA (pUC18) at pH 7.6 with 193 nm laser light results in low yields of prompt single strand breakage (air-saturated sample phi ssh = [1.5 +/- 0.1] x 10(4), argon-saturated sample phi ssh = [0.9 +/- 0.1] x 10(4). Treatment of the irradiated DNA samples with Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein results in an approximate 20-fold increase in the yield of single strand break-age (air-saturated sample phi fpg = [33.1 +/- 3.1] x 10(-4), argon-saturated sample phi fpg = [23.8 +/- 2.6] x 10(-4). This result indicates that 193 nm light induces other modification(s) (most likely of the purine moieties) that are 20 times more abundant than prompt strand breakage within the DNA matrix.


Assuntos
DNA Recombinante/efeitos da radiação , Proteínas de Escherichia coli , N-Glicosil Hidrolases/biossíntese , Raios Ultravioleta , Adutos de DNA , DNA-Formamidopirimidina Glicosilase , Escherichia coli/enzimologia
13.
Proc Natl Acad Sci U S A ; 94(1): 109-14, 1997 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-8990169

RESUMO

Repair of oxidative damage to DNA bases is essential to prevent mutations and cell death. Endonuclease III is the major DNA glycosylase activity in Escherichia coli that catalyzes the excision of pyrimidines damaged by ring opening or ring saturation, and it also possesses an associated lyase activity that incises the DNA backbone adjacent to apurinic/apyrimidinic sites. During analysis of the area adjacent to the human tuberous sclerosis gene (TSC2) in chromosome region 16p13.3, we identified a gene, OCTS3, that encodes a 1-kb transcript. Analysis of OCTS3 cDNA clones revealed an open reading frame encoding a predicted protein of 34.3 kDa that shares extensive sequence similarity with E. coli endonuclease III and a related enzyme from Schizosaccharomyces pombe, including a conserved active site region and an iron/sulfur domain. The product of the OCTS3 gene was therefore designated hNTH1 (human endonuclease III homolog 1). The hNTH1 protein was overexpressed in E. coli and purified to apparent homogeneity. The recombinant protein had spectral properties indicative of the presence of an iron/sulfur cluster, and exhibited DNA glycosylase activity on double-stranded polydeoxyribonucleotides containing urea and thymine glycol residues, as well as an apurinic/apyrimidinic lyase activity. Our data indicate that hNTH1 is a structural and functional homolog of E. coli endonuclease III, and that this class of enzymes, for repair of oxidatively damaged pyrimidines in DNA, is highly conserved in evolution from microorganisms to human cells.


Assuntos
Cromossomos Humanos Par 16 , Reparo do DNA , Endodesoxirribonucleases/genética , Endodesoxirribonucleases/metabolismo , Proteínas de Escherichia coli , Adenocarcinoma/enzimologia , Adenocarcinoma/genética , Sequência de Aminoácidos , Clonagem Molecular , Colo/enzimologia , DNA Complementar/genética , DNA Liase (Sítios Apurínicos ou Apirimidínicos) , Desoxirribonuclease (Dímero de Pirimidina) , Desoxirribonuclease IV (Fago T4-Induzido) , Endodesoxirribonucleases/isolamento & purificação , Escherichia coli/enzimologia , Escherichia coli/genética , Humanos , Liases/metabolismo , Dados de Sequência Molecular , Dímeros de Pirimidina/metabolismo , Proteínas Recombinantes/isolamento & purificação , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Distribuição Tecidual
14.
Nucleic Acids Res ; 24(17): 3307-12, 1996 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-8811082

RESUMO

The Escherichia coli endonuclease III (Nth-Eco) protein is involved in the removal of damaged pyrimidine residues from DNA by base excision repair. It is an iron-sulphur enzyme possessing both DNA glycosylase and apurinic/apyrimidinic lyase activities. A database homology search identified an open reading frame in genomic sequences of Schizosaccharomyces pombe which encodes a protein highly similar to Nth-Eco. The gene has been subcloned in an expression vector and the protein purified to apparent homogeneity. The S.pombe Nth homologue (Nth-Spo) is a 40.2 kDa protein of 355 amino acids. Nth-Spo possesses glycosylase activity on different types of DNA substrates with pyrimidine damage, being able to release both urea and thymine glycol from double-stranded polymers. The eukaryotic protein removes urea more efficiently than the prokaryotic enzyme, whereas its efficiency in excising thymine glycol is lower. A nicking assay was used to show that the enzyme also exhibits an AP lyase activity on UV- and gamma-irradiated DNA substrates. These findings show that Nth protein is structurally and functionally conserved from bacteria to fission yeast.


Assuntos
Reparo do DNA , Endodesoxirribonucleases/genética , Proteínas de Escherichia coli , Schizosaccharomyces/genética , Sequência de Aminoácidos , Clonagem Molecular , DNA Glicosilases , DNA Liase (Sítios Apurínicos ou Apirimidínicos) , Desoxirribonuclease (Dímero de Pirimidina) , Desoxirribonuclease IV (Fago T4-Induzido) , Endodesoxirribonucleases/metabolismo , Células Eucarióticas , Liases/análise , Dados de Sequência Molecular , N-Glicosil Hidrolases/análise , Proteínas Recombinantes/metabolismo , Schizosaccharomyces/enzimologia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Timina/análogos & derivados , Timina/metabolismo , Ureia/metabolismo
15.
Mol Carcinog ; 16(4): 188-96, 1996 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-8784461

RESUMO

Ionizing radiation and other free radical-generating systems induce a great variety of oxidative damage to DNA bases. The major known lesions are repaired by two well-characterized DNA glycosylases of Escherichia coli, endonuclease III (Nth) and formamidopyrimidine-DNA glycosylase (Fpg), which have associated AP lyase activities. To detect and characterize potentially harmful oxidative base DNA lesions that may be repaired by alternative means, we exposed plasmid DNA to low doses of gamma-rays and removed the major base lesions by treatment with Nth and Fpg proteins. The closed circular DNA remaining after these treatments was used as a substrate of the UvrABC endonuclease complex from E. coli and as a template in a DNA polymerase arrest assay in vitro. The circular DNA contained lesions that were recognized and incised by the UvrABC nuclease and also lesions that blocked DNA polymerization in vitro. The blocking lesions were more abundant in DNA irradiated under nitrogen than under air and occurred mainly at tandem guanines; however, they were also frequent at tandem adenines and tandem cytosines.


Assuntos
Proteínas de Bactérias/metabolismo , Dano ao DNA , Reparo do DNA , DNA/efeitos da radiação , Endodesoxirribonucleases/metabolismo , Proteínas de Escherichia coli , Escherichia coli/metabolismo , N-Glicosil Hidrolases/metabolismo , Citosina/metabolismo , DNA/metabolismo , DNA Polimerase Dirigida por DNA/metabolismo , DNA-Formamidopirimidina Glicosilase , Desoxirribonuclease (Dímero de Pirimidina) , Escherichia coli/enzimologia , Raios gama , Guanina/metabolismo , Oxirredução
16.
Mutat Res ; 346(2): 77-84, 1995 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-7885403

RESUMO

This paper introduces a new parameter, derivable from dose-response data for induced mutagenesis in bacteria, that can be used to quantify mutational responses in short-term tests. We called this parameter the mutational response of the bipartite experimental system (agent plus cells). We defined it as being jointly proportional to the efficiency of the mutagen and the sensitivity of the test. We show how this quantity can be used to rank order chemical carcinogens on the basis of their mutagenicity and to determine the strength of any quantitative correlation that may exist between mutagenicity in bacteria and carcinogenicity in rodents. We find that this particular measure of mutational response for 10 direct-acting monofunctional alkylating agents correlates remarkably well with the rodent carcinogenicity of these chemicals measured in terms of their reciprocal TD50 values.


Assuntos
Alquilantes/toxicidade , Testes de Carcinogenicidade/métodos , Testes de Mutagenicidade/métodos , Salmonella typhimurium/efeitos dos fármacos , Animais , Carcinógenos/toxicidade , Relação Dose-Resposta a Droga , Modelos Teóricos , Mutagênicos/toxicidade , Roedores , Salmonella typhimurium/genética , Sensibilidade e Especificidade
17.
Mol Carcinog ; 9(4): 200-9, 1994 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-8148053

RESUMO

We investigated the influence of the alkyltransferases (ATases) encoded by the ada and ogt genes of Escherichia coli on the mutational specificity of alkylating agents. A new mutational assay for selection of supF- mutations in shuttle-vector plasmids was used. Treating plasmid-bearing bacteria with N-methyl-N-nitrosourea (MNU), N-ethyl-N-nitrosourea (ENU), and ethyl methanesulfonate (EMS) dramatically increased the mutation frequency (from 33-fold to 789-fold). The vast majority of mutations (89-100%) were G:C-->A:T transitions. This type of mutation increased in ada- (MNU) or ogt- (ENU) bacteria, suggesting that repair of O6-methylguanine by ada ATase and repair of O6-ethylguanine by ogt ATase contribute mainly to the decrease in G:C-->A:T transitions. The analysis of neighboring base sequences revealed an overabundance of G:C-->A:T transitions at 5'-GG sequences. The 5'-PuG bias increased in ATase-defective cells, suggesting that these sequences were not refractory to repair. G:C-->A:T transitions occurred preferentially in the untranscribed strand after in vivo exposure. That this strand specificity was detected even in bacteria devoid of ATase activity (ada- ogt-) and not after in vitro mutagenesis suggests a bias for damage induction rather than for DNA repair. Highly significant differences were found between the in vivo and in vitro incidences of G:C-->A:T substitutions at the two major hotspots, positions 123 (5'-GGG-3'; antisense strand) and 168 (5'-GGA-3'; sense strand). These results are explained by differences in the probability of formation of stem-loop structures in vivo and in vitro.


Assuntos
Alquilantes/química , Proteínas de Bactérias/metabolismo , Reparo do DNA , Proteínas de Escherichia coli , Escherichia coli/genética , Metiltransferases/metabolismo , Mutagênese , Composição de Bases , Escherichia coli/enzimologia , O(6)-Metilguanina-DNA Metiltransferase , Mutação Puntual , Fatores de Transcrição
18.
Mutagenesis ; 8(2): 127-31, 1993 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-8464381

RESUMO

The mutagenic and lethal effects of nine halogenated methanes (CCl4, carbon tetrachloride; CHCl3, chloroform; CH2Cl2, dichloromethane; CBr4, carbon tetrachloride; CHBr3, bromoform; CH2Br2, dibromomethane; CI4, carbon tetraiodide; CHI3, iodoform; and CH2I2, diiodomethane) have been investigated with the Ara forward-mutation assay of Salmonella typhimurium. Five substances (CH2Cl2, CBr4, CH2Br2, CHI3 and CH2I2) gave clear mutagenic responses. In all these cases the mutagenicity diminished in the presence of mammalian metabolic activation (S9 mixture). Two halomethanes (CCl4 and CHBr3) were classified as 'questionable' mutagens since they did not double the spontaneous value although a dose-response curve was obtained. All halomethanes tested exerted a lethal effect. A high concordance was found between lethality and chemical reactivity, as expected from the type and number of halogenated substituents. Compounds with equal numbers of substituents were lethal in the order I > Br > Cl. Additionally, the lethality of compounds with identical halogen substituents increased by successive halogenations. No such concordances were observed with respect to mutagenic activity. Structure-activity quantitative relationships were investigated by using the previously reported values of the polarographic half-wave reduction potential (-E1/2), a physicochemical parameter related to the energy required to put an electron into the lowest unoccupied molecular orbital. The lethality, quantified as LD37, correlated highly with the -E1/2 values for the nine halogenated compounds (r = -0.955 P < 0.001). These data suggest that halomethanes which are reduced easily will induce higher lethality than those with low reduction potential, in agreement with the predicted effects on lipid peroxidation and hepatotoxicity.(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Hidrocarbonetos Halogenados/farmacologia , Metano/análogos & derivados , Metano/farmacologia , Testes de Mutagenicidade/métodos , Salmonella typhimurium/efeitos dos fármacos , Relação Dose-Resposta a Droga , Hidrocarbonetos Bromados/farmacologia , Hidrocarbonetos Clorados/farmacologia , Hidrocarbonetos Iodados/farmacologia , Relação Estrutura-Atividade
19.
Carcinogenesis ; 14(2): 303-5, 1993 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8435871

RESUMO

The supF gene of Escherichia coli has been widely used as a mutagenic target in several shuttle-vector plasmids. Mutations in this gene are usually screened by a colony colour assay based on the suppression of a lacZ amber mutation in an appropriate bacterial indicator strain. This screening method cannot measure the low mutation frequencies usually detected in prokaryotes, and therefore precludes the use of supF gene for studying mutational spectra in bacteria. In this paper we report the development of a simple method for the selection of supF forward mutations in shuttle-vector plasmids. The method has implied the construction of an araD- araC(Am) mutant strain (MBL50) of E.coli. The L-arabinose sensitivity caused by the accumulation of a toxic intermediate in araD- mutants is abolished in MBL50 because the araC(Am) mutation blocks the L-arabinose catabolic pathway. Strain MBL50 becomes sensitive to L-arabinose when transformed with a supF+ plasmid but remains resistant upon transformation with a supF- mutant. This new L-arabinose resistance selection method was able to detect supF- mutant fractions up to three orders of magnitude below those determined with the colony colour screening assay. The method was further validated by carrying out in vivo mutagenesis experiments with N-methyl-N-nitrosourea (MNU) and a shuttle-vector-bearing strain (UC2109) completely defective in O6-methylguanine (O6meG) alkyltransferase repair capacity. The DNA sequence alterations of 22 independent supF- mutants induced by MNU were determined. All mutations were G:C-->A:T transitions in agreement with the predicted significance of the mispairing potential of the O6meG lesion. A preference for the sequence 5'-GG-3' was detected, revealing a 5'-flanking base influence. The accumulation of all 22 MNU-induced mutations in three sites of the supF genes might be related to the lack of O6meG alkyltransferase repair capacity of strain UC2109. The L-arabinose resistance method described in this paper allows rapid scoring and sequencing of forward mutations in the supF gene on shuttle-vectors, thus permitting its use as a genetic target for repair and mutagenesis studies in bacteria. Since shuttle-vectors replicate both in bacteria and mammalian cells, this method makes it possible to compare prokaryotic and eukaryotic mutational spectra.


Assuntos
Escherichia coli/genética , Genes Bacterianos/genética , Genes Supressores/genética , Vetores Genéticos/genética , Plasmídeos/genética , Sequência de Bases , Metilnitrosoureia , Dados de Sequência Molecular , Mutagênese , Mutação , Fenótipo , RNA de Transferência/genética
20.
Environ Mol Mutagen ; 19(4): 288-96, 1992.
Artigo em Inglês | MEDLINE | ID: mdl-1600955

RESUMO

In this work we report on the isolation of an Escherichia coli K-12 mutation, which confers a high sensitivity to bacteria cells to mutagenesis by simple monofunctional alkylating agents. The mutation emerged spontaneously from a bacterial strain that already proved useful in various mutagenicity studies. By monitoring the influence of such a mutation on the frequency of induced mutation by ethylating (EMS, DES, ENU, ENNG) vs. methylating (MMS, DMS, MNU, MNNG) compounds, and on the in vivo repair capacity for different alkyl-DNA lesions (O6-alkG, N7-alkG, N3-meA), we conclude that the mutation should affect the gene (ogt) that encodes constitutive DNA repair alkyltransferase (ATase). Thus in the presence of ada, differences in mutagenicity were observed only with ethylating agents; the sensitization of cells to both the ethylating and methylating partners requiring, by contrast, the absence of the ada protein. These results support the reported in vitro substrate specificities for both ogt and ada ATases. The parental cells exhibited biphasic dose-response curves in accordance with the idea of low basal level saturation attributed to the uninducible ogt ATase. Deficient bacterial derivatives showed, by contrast, linear mutation induction responses. The in vivo removal of alkylated bases from DNA was measured in bacterial strains deficient in the excision repair pathway (delta uvrB) and unable to induce the adaptive response (ada::Tn10). The very low initial levels for O6-meG and O6-etG (1.1 and 0.2 molecules per cell, respectively) were readily repaired by the parental cells but remained unchanged in the hypermutable derivatives. This result suggests that in the absence of nucleotide excision repair and of the adaptive response, no alternative pathway, other than ogt, is available for the repair of the major mutagenic lesion, O6-alkG, at least during the first 4 hours after alkylation. Comparatively, no differences were found in the capacity to repair the major lethal adduct, N3-meA, in agreement with the fact that no effect on cell survival was detected. In conclusion, we propose that the biological significance of the ogt protein relies mainly on its ability to prevent mutagenesis by low levels of bulkier ethylation products (especially in the absence of uvr excision repair.(ABSTRACT TRUNCATED AT 400 WORDS)


Assuntos
Proteínas de Bactérias/genética , Dano ao DNA , Reparo do DNA , Proteínas de Escherichia coli , Escherichia coli/genética , Metiltransferases/genética , Alquilantes/farmacologia , Alquilação , Cromatografia Líquida de Alta Pressão , Resistência Microbiana a Medicamentos/genética , Escherichia coli/efeitos dos fármacos , Escherichia coli/isolamento & purificação , Metanossulfonato de Etila/farmacologia , Metiltransferases/metabolismo , Mutagênese , O(6)-Metilguanina-DNA Metiltransferase , Fatores de Transcrição
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